How to write and publish a scientific paper - Barbara Gastel, Robert A. Day 2022

References

Aaronson S. 1977. Style in scientific writing. In E Garfield (ed.), Essays of an information scientist, vol. 3, 4—13. Available at www.garfield.library.upenn.edu/essays/v3p004y1977-78.pdf. Accessed August 21, 2021.

ACS Publications. 2020. Guidelines for table of contents/abstract graphics. Available at pubsapp.acs.org/paragonplus/submission/toc_abstract_graphics _guidelines.pdf? Accessed August 20, 2021.

Alves T. 2021. Overlay journals, overlay reviews: has their time finally come? Science Editor, June 24. Available at www.csescienceeditor.org/article/overlay-journals-overlay-reviews-has-their-time-finally-come/. Accessed August 17, 2021.

American National Standards Institute. 1969. American national standard for the abbreviation of titles of periodicals. ANSI Z39.5-1969. New York: American National Standards Institute.

American National Standards Institute. 1979a. American national standard for the preparation of scientific papers for written or oral presentation. ANSI Z39.16-1979. New York: American National Standards Institute.

American National Standards Institute. 1979b. American national standard for writing abstracts. ANSI Z39.14-1979. New York: American National Standards Institute.

Anderson JA, Thistle MW. 1947. On writing scientific papers. Bull Can J Res, December 31, 1947, NRC no. 1691.

Annesley T. 2010a. Bars and pies make better desserts than figures. Clin Chem. 56:1394—1400.

Annesley T. 2010b. Put your best figure forward: line graphs and scattergrams. Clin Chem. 56:1229—1233.

Aoki S. n.d. Design tips for graphical abstracts. (Webinar.) Available at learn.biorender.com/tutorial/designing-graphical-abstracts. Accessed August 20, 2021.

arXiv.org. 2021. Celebrating arXiv’s 30th anniversary. Available at blog.arxiv.org/2021/08/13/celebrating-arxivs-30th-anniversary/. Accessed August 16, 2021.

Banik GM, Baysinger G, Kamat PV, Pienta NJ, eds. 2020. ACS guide to scholarly communication. Washington, DC: American Chemical Society. Available at solutions.acs.org/solutions/acs-guide-to-scholarly-communication/. Accessed August 17, 2021.

Becker HS. 2020. Writing for social scientists: how to start and finish your thesis, book, or article. 3rd ed. Chicago: University of Chicago Press.

Beer D, McMurrey D. 2019. A guide to writing as an engineer. 5th ed. Hoboken, NJ: Wiley.

Belcher WK. 2019. Writing your journal article in twelve weeks: a guide to academic publishing success. 2nd ed. Chicago: University of Chicago Press.

Bernstein TM. 1965. The careful writer: a modern guide to English usage. New York: Atheneum.

Bishop CT. 1984. How to edit a scientific journal. Baltimore: Williams and Wilkins.

Blakeslee A. 1994. Late night thoughts about science writing. Quill, November/ December, 35—38.

Blum D, Knudson M, Henig RM, eds. 2006. A field guide for science writers. 2nd ed. New York: Oxford University Press.

Booth V. 1981. Writing a scientific paper and speaking at scientific meetings. 5th ed. London: The Biochemical Society.

Briscoe MH. 1996. Preparing scientific illustrations: a guide to posters, presentations, and publications. 2nd ed. New York: Springer-Verlag.

Bűky E, Schwartz M, Einsohn A. 2019. The copyeditor’s workbook: exercises and tips for honing your editorial judgment. Oakland: University of California Press.

Butterfield J, ed. 2015. Fowler’s dictionary of modern English usage. 4th ed. New York: Oxford University Press.

Carpenter S, ed. 2020. The craft of science writing: selections from The Open Notebook. Madison, WI: The Open Notebook.

Castelvecchi D. 2015. Physics paper sets record with more than 5,000 authors. Nature. Available at doi.org/10.1038/nature.2015.17567. Accessed August 19, 2021.

CBE Style Manual Committee. 1983. CBE style manual: a guide for authors, editors, and publishers in the biological sciences. 5th ed. Bethesda, MD: Council of Biology Editors.

Chase S. 1954. Power of words. New York: Harcourt, Brace.

Chicago manual of style. 2017. 17th ed. Chicago: University of Chicago Press.

Christiansen SL, Iverson C, Flanagin A, Livingston EH, Fischer L, Manno C, Gregoline B, Frey T, Fontanarosa PB, Young RK. 2020. AMA manual of style: a guide for authors and editors. 11th ed. New York: Oxford University Press.

Clark C. 2005. Conflict of interest and scientific publication: a synopsis of the CSE retreat. Science Editor. 28:39—43.

Claxton LJ. 2005. Scientific authorship. Part 2. History, recurring issues, practices, and guidelines. Mutat Res. 589:31—45.

Coghill AM, Garson LR, eds. 2006. The ACS style guide: effective communication of scientific information. 3rd ed. Washington, DC: American Chemical Society; New York: Oxford University Press.

Collinge R. 2017. How to design for color blindness. Available at www.getfeedback.com/resources/ux/how-to-design-for-color-blindness. Accessed August 22, 2021.

Committee on Science, Engineering, and Public Policy. 2009. On being a scientist: a guide to responsible conduct in research. 3rd ed. Washington, DC: National Academies Press. Available at www.nap.edu/catalog/12192/on-being-a-scientist-a-guide-to-responsible-conduct-in. Accessed August 18, 2021.

Council of Biology Editors. 1968. Proposed definition of a primary publication. Newsletter, Council of Biology Editors, November 1968, 1—2.

Council of Science Editors. 2020. CSE’s white paper on promoting integrity in scientific journal publications, 2020 revision. Available at www.councilscienceeditors.org/resource-library/editorial-policies/white-paper-on-publication-ethics/. Accessed August 19, 2021.

Cromey DW. 2010. Avoiding twisted pixels: ethical guidelines for the appropriate use and manipulation of scientific digital images. Sci Eng Ethics. 16:639—667.

Cromey DW. 2012. Digital images are data: and should be treated as such. In DJ Taatges and J Roth (eds.), Cell imaging techniques: methods and protocols, 2nd ed., 1—27. New York: Humana Press.

Daugherty G. 1999. You can write for magazines. Cincinnati: Writer’s Digest Books.

Davidoff F. 2000. Who’s the author? Problems with biomedical authorship, and some possible solutions. Science Editor. 23:111—119.

Day RA. 1975. How to write a scientific paper. ASM News. 42:486—494.

Day RA, Sakaduski ND. 2011. Scientific English: a guide for scientists and other professionals. 3rd ed. Santa Barbara, CA: ABC-CLIO.

Dean C. 2009. Am I making myself clear? A scientist’s guide to talking to the public. Cambridge, MA: Harvard University Press.

DePaul A. 2021. Scientific publishers expedite name changes for authors. Nature. Posted July 21, 2021. Available at doi.org/10.1038/d41586-021-02014-7. Accessed August 20, 2021.

DeTora L, ed. 2020. Regulatory writing: an overview. 2nd ed. Rockville, MD: Regulatory Affairs Professionals Society.

Ebel HF, Bliefert C, Russey WE. 2004. The art of scientific writing: from student reports to professional publications in chemistry and related fields. 2nd ed. Weinheim, Germany: Wiley-VCH.

Editorial. 2020. Communication is key to constructive peer review. Nature. 582:314. Available at media.nature.com/original/magazine-assets/d41586-020-01622-z/d41586-020-01622-z.pdf. Accessed September 5, 2021.

Einsohn A, Schwartz M. 2019. The copyeditor’s handbook: a guide for book publishing and corporate communications. 4th ed. Oakland: University of California Press.

Elmore SA, Weston EH. 2020. Predatory journals: what they are and how to avoid them. Toxicol Pathol. 48(4):607—610.

Elsevier. 2021. Graphical abstracts. www.elsevier.com/authors/tools-and-resources/visual-abstract. Accessed August 20, 2021.

Faulkes Z. 2021. Better posters: plan, design, and present an academic poster. Exeter, UK: Pelagic Publishing.

Fisher RA. 1938. Presidential address. Sankhyā: The Indian Journal of Statistics. 4(1):14—17. Available at www.jstor.org/stable/40383882. Accessed January 31, 2022.

Frick T, Dagli C, Barrett A, Myers R, Kwon K, Tomita K. 2021. How to recognize plagiarism: tutorials and tests. Bloomington, IN: Department of Instructional Systems Technology, School of Education, Indiana University. plagiarism.iu.edu/. Accessed August 18, 2021.

Friedland AJ, Folt CL. 2009. Writing successful science proposals. 2nd ed. New Haven, CT: Yale University Press.

Gahran A. 2000. Instant information. Writer’s Digest, June 2000, 48—49.

Gahran A. 2001. Repurposing content for the web. Writer’s Digest, June 2001, 50—51.

Garfield E. 1999. Journal impact factor: a brief review. CMAJ. 161:979—980.

Gastel B. 1983. Presenting science to the public. Philadelphia: ISI Press.

Gastel B. 1991. A strategy for reviewing books for journals. BioScience. 41:635—637.

Gastel B. 2005. Health writer’s handbook. 2nd ed. Ames, IA: Blackwell.

Gastel B. 2015. Editing and proofreading your own work. AMWA J. 30(4): 147—151.

Gerin W, Kinkade C, Page NL. 2017. Writing the NIH grant proposal: a step-by-step guide. 3rd ed. Los Angeles: SAGE.

Germano W. 2013. From dissertation to book. 2nd ed. Chicago: University of Chicago Press.

Godlee F, Jefferson T, eds. 2003. Peer review in health sciences. 2nd ed. London: BMJ Books.

Goodman SN, Berlin S, Fletcher SW, Fletcher RH. 1994. Manuscript quality before and after peer review and editing at Annals of Internal Medicine. Ann Intern Med. 121:11—21.

Grant MJ, Booth A. 2009. A typology of reviews: an analysis of 14 review types and associated methodologies. Health Info Libr J. 16:91—108.

Gray T. 2020. Publish and flourish: become a prolific scholar. 15th anniversary ed. Las Cruces: Teaching Academy, New Mexico State University.

Hall GM, ed. 2013. How to write a paper. 5th ed. Chichester, West Sussex, UK: Wiley-Blackwell.

Hall S, Moskovitz C, Pemberton M. 2021. Text recycling: TRPP best practices for researchers. Text Recycling Research Project. Available at textrecycling.org/files/2021/04/TRRP_Best-Practices-for-Researchers.pdf. Accessed August 18, 2021.

Halm EA, Landon BE. 2007. Everything you wanted to know about writing a research abstract but were too afraid (or started too late) to ask. SGIM Forum 30(12):2, 13. Available at www.sgim.org/File%20Library/SGIM/Resource%20Library/Forum/2007/Forum200712.pdf. Accessed August 19, 2021.

Hancock E. 2003. Ideas into words: mastering the craft of science writing. Baltimore: Johns Hopkins University Press.

Hartley J. 2007. Colonic titles! The Write Stuff. 16:147—149.

Hayes R, Grossman D. 2006. A scientist’s guide to talking with the media: practical advice from the Union of Concerned Scientists. New Brunswick, NJ: Rutgers University Press.

Houghton B. 1975. Scientific periodicals: their historical development, characteristics and control. Hamden, CT: Shoe String Press.

Huth EJ. 1987. Medical style and format: an international manual for authors, editors, and publishers. Baltimore: Williams and Wilkins.

Huth EJ. 1999. Writing and publishing in medicine. 3rd ed. Baltimore: Williams and Wilkins.

Ibrahim AM, ed. 2018. Use of a visual abstract to disseminate scientific research. Available at static1.squarespace.com/static/5854aaa044024321 a353bb0d/t/5a527aa89140b76bbfb2028a/1515354827682/VisualAbstract _Primer_v4_1.pdf. Accessed August 20, 2021.

Interacademy Partnership. 2016. Doing global science: a guide to responsible conduct in the global research enterprise. Princeton, NJ: Princeton University Press. Available at www.interacademies.org/publication/doing-global-science-guide-responsible-conduct-global-research-enterprise. Accessed August 18, 2021.

International Committee of Medical Journal Editors. 2019. Recommendations for the conduct, reporting, editing, and publication of scholarly work in medical journals. Updated December 2021. www.icmje.org/icmje-recommendations.pdf. Accessed February 17, 2022.

Iverson C. 2002. US medical journal editors’ attitudes toward submissions from other countries. Science Editor. 25:75—78. Available at www.councilscienceeditors.org/wp-content/uploads/v25n3p075-078.pdf. Accessed September 4, 2021.

Jambor H, Antonietti A, Alicea B, Audisio TL, Auer S, Bhardwaj V, Burgess SJ, Ferling I, Gazda MA, Hoeppner LH, Ilangovan V, Lo H, Olson M, Mohamed SY, Sarabipour S, Varma A, Walavalkar K, Wissink EM, Weissgerber TL. 2021. Creating clear and informative image-based figures for scientific publications. PLoS Biol. 19(3):e3001161. Available at doi.org/10.1371/journal .pbio.3001161. Accessed February 15, 2022.

Kaiser J. 2017. The preprint dilemma. Science. 357:1344—1349.

Kanel S, Gastel B. 2008. Careers in science editing: an overview to use or share. Science Editor. 31:18—22. Available at www.councilscienceeditors.org/wp-content/uploads/v31n1p018-022.pdf. Accessed September 5, 2021.

Keegan DA, Bannister SL. 2003. Effect of colour coordination of attire with poster presentation on poster popularity. CMAJ. 169:1291—1292.

Kupferschmidt K. 2020. Preprints bring “firehose” of outbreak data. Science. 367:963—964.

Lang TA. 2010. How to write, publish, and present in the health sciences: a guide for clinicians and laboratory researchers. Philadelphia: American College of Physicians.

Lederer R. 1987. Anguished English. New York: Dell.

Lewis MA. 2008. The financing and cost accounting of science: budgets and budget administration. In LM Scheier and WL Dewey (eds.), The complete writing guide to NIH behavioral science grants, 347—395. New York: Oxford University Press.

Lillie B. 2016. Science and the art of personal storytelling. In C Wilcox, B Brookshire, and JG Goldman (eds.), Science blogging: the essential guide, 96—103. New Haven, CT: Yale University Press.

Linacre S, Syed I. 2020. The scientific predator has evolved—here’s how you can fight back. Available at blog.cabells.com/2020/06/24/the-scientific -predator-has-evolved-heres-how-you-can-fight-back. Accessed September 5, 2021.

Lock S. 1985. A difficult balance: editorial peer review in medicine. London: Nuffield Provincial Hospitals Trust.

Mackay AL, Ebison M, eds. 1977. Scientific quotations: the harvest of a quiet eye. New York: Crane, Russak & Company, Inc.

McGirr CJ. 1973. Guidelines for abstracting. Tech Commun. 25(2):2—5.

Menninger H, Gropp R. 2008. Communicating science: a primer for working with the media. Washington, DC: American Institute of Biological Sciences.

Meredith D. 2021. Explaining research: how to reach key audiences and advance your work. 2nd ed. New York: Oxford University Press.

Meyer RE. 1977. Reports full of “gobbledygook.” J Irreproducible Results. 22(4):12.

Michaelson HB. 1990. How to write and publish engineering papers and reports. 3rd ed. Phoenix: Oryx Press.

Mitchell JH. 1968. Writing for professional and technical journals. New York: Wiley.

Mitrany D. 2005. Creating effective poster presentations: the editor’s role. Science Editor. 28:114—116. Available at www.councilscienceeditors.org/wp-content/uploads/v28n4p114-116.pdf. Accessed September 4, 2021.

Morgan P. 1986. An insider’s guide for medical authors and editors. Philadelphia: ISI Press.

National Institutes of Health. 2010. Research integrity. Available at grants .nih.gov/grants/research_integrity/definitions.htm. Accessed August 18, 2021.

O’Connor M. 1978. Standardisation of bibliographical reference systems. Br Med J. 1(6104):31—32.

O’Connor M. 1991. Writing successfully in science. London: HarperCollins Academic.

O’Connor M, Woodford FP. 1975. Writing scientific papers in English: an ELSE—Ciba Foundation guide for authors. Amsterdam: Associated Scientific.

Outing S. 2001. Think locally, write globally. Writer’s Digest, July 2001, 52—53.

Page MJ, McKenzie JE, Bossuyt PM, Boutron I, Hoffmann TC, Mulrow CD, Shamsheer L, Tetzlaff JM, Akl EA, Brennan SE, Chou R, Glanville J, Grimshaw JM, Hróbjartsson A, Lalu MM, Li T, Loder EW, Mayo-Wilson E, McDonald S, McGuinness LA, Stewart LA, Thomas J, Tricco AC, Welch VA, Whiting P, Moher D. 2021. The PRISMA 2020 statement: an updated guideline for reporting systematic reviews. BMJ. 372: n71. Available at doi.org/10.1136/bmj.n71. Accessed August 29, 2021.

Peat J, Elliott E, Baur L, Keena V. 2002. Scientific writing: easy when you know how. London: BMJ Books.

Penrose AM, Katz SB. 2010. Writing in the sciences: exploring conventions of scientific discourse. 3rd ed. New York: Longman.

Publication manual of the American Psychological Association. 7th ed. 2020. Washington, DC: American Psychological Association.

Ratnoff OD. 1981. How to read a paper. In KS Warren (ed.), Coping with the biomedical literature, 95—101. New York: Praeger.

Reid WM. 1978. Will the future generations of biologists write a dissertation? BioScience. 28:651—654.

Roig M. 2015. Avoiding plagiarism, self-plagiarism, and other questionable writing practices: a guide to ethical writing. Available at ori.hhs.gov /avoiding-plagiarism-self-plagiarism-and-other-questionable-writing-practices -guide-ethical-writing. Accessed August 18, 2021.

Romero-Olivares AL. 2019. Reviewers, don’t be rude to nonnative English speakers. www.science.org/content/article/reviewers-don-t-be-rude-nonnative-english-speakers. Accessed September 5, 2021.

Rosner JL. 1990. Reflections on science as a product. Nature. 345:108.

Rougier NP, Droettboom M, Bourne PE. 2014. Ten simple rules for better figures. PLOS Comput Biol. 10(9): e1003833. Available at doi.org/10.1371 /journal.pcbi.1003833. Accessed August 21, 2021.

Rowan KE. 1990. Strategies for explaining complex science news. Journal Educ. 45(2):25—31.

Saleh N. 2013. The complete guide to article writing. Cincinnati: Writer’s Digest Books.

San Francisco Declaration on Research Assessment. 2012. Available at sfdora.org/read/. Accessed February 17, 2022.

Shipman M. 2015a. Selfish reasons for researchers to publicize their study findings. Available at sciencecommunicationbreakdown.wordpress.com. Accessed August 28, 2021.

Shipman WM. 2015b. Handbook for science public information officers. Chicago: University of Chicago Press.

Sternberg RJ, Sternberg K. 2016. The psychologist’s companion: a guide to professional success for students, teachers, and researchers. 6th ed. New York: Cambridge University Press.

STM. 2021. STM global brief 2021—economics and market size. Available at www.stm-assoc.org/2021_10_19_STM_Global_Brief_2021_Economics_and_Market_Size.pdf. Accessed February 12, 2022.

Stocking SH, and the Writers of the New York Times. 2011. The New York Times reader: science and technology. Washington, DC: CQ Press.

Strunk W Jr, White EB. 2000. The elements of style. 4th ed. Boston: Allyn and Bacon.

Style Manual Subcommittee, Council of Science Editors. 2014. Scientific style and format: the CSE manual for authors, editors, and publishers. 8th ed. Chicago, IL: University of Chicago Press.

Sun XL, Zhou J. 2002. English versions of Chinese authors’ names in biomedical journals: observations and recommendations. Science Editor. 25:3—4. Available at www.councilscienceeditors.org/wp-content/uploads/v25n1p003-004.pdf. Accessed August 20, 2021.

Tananbaum G. 2013. Article-level metrics: a SPARC primer. Available at sparcopen.org/wp-content/uploads/2016/01/SPARC-ALM-Primer.pdf. Accessed August 19, 2021.

Task Force of Academic Medicine and the GEA-RIME Committee. 2001. Appendix 1: checklist of review criteria. Acad Med. 76:958—959. Available at journals.lww.com/academicmedicine/Fulltext/2001/09000/APPENDIX_1 __CHECKLIST_OF_REVIEW_CRITERIA.37.aspx. Accessed September 5, 2021.

Taylor RB. 2018. Medical writing: a guide for clinicians, educators, and researchers. 3rd ed. Cham, Switzerland: Springer.

Thornton RJ. 1987. “I can’t recommend the candidate too highly”: an ambiguous lexicon for job recommendations. Chronicle of Higher Education, February 25, 42.

Thornton RJ. 2003. L.I.A.R: the lexicon of intentionally ambiguous recommendations. 2nd ed. Napierville, IL: Sourcebooks.

Trelease SF. 1958. How to write scientific and technical papers. Baltimore: Williams and Wilkins.

Tuchman BW. 1980. The book: a lecture sponsored by the Center for the Book in the Library of Congress and the Authors League of America. Washington, DC: Library of Congress.

University of Queensland. n.d. Three Minute Thesis. Available at threeminutethesis.uq.edu.au/home. Accessed September 4, 2021.

U.S. Copyright Office. n.d. International issues. Available at www.copyright.gov/international-issues/index.html. Accessed August 28, 2021.

U.S. Copyright Office. 2021. More information on fair use. Available at www.copyright.gov/fair-use/more-info.html. Accessed August 28, 2021.

Vence T. 2015. Know your PIO. The Scientist. 29(1):67—69.

Waquet F. 2008. Posters and poster sessions: a history. American Institute of Physics History Newsletter. Available at repository.aip.org/islandora/object/nbla:275060#page/5/mode/2up. Accessed September 4, 2021.

Warner A. 2021. 5 free online plagiarism checkers—which works in 2021. Available at www.websiteplanet.com/blog/best-plagiarism-checking-tools/. Accessed August 18, 2021.

Weiss EH. 2005. The elements of international English style: a guide to writing correspondence, reports, technical documents, and internet pages for a global audience. Armonk, NY: Sharpe.

Wilcox C, Brookshire B, Goldman JG, eds. 2016. Science blogging: the essential guide. New Haven, CT: Yale University Press.

Wiley S. 2009. Bring back reprint requests. The Scientist. 23(9):29.

Woolston C. 2015. Fruit-fly paper has 1,000 authors. Nature. 521:263.

Writers of SciLance. 2013. The science writers’ handbook: everything you need to know to pitch, publish, and prosper in the digital age. Boston: Da Capo Press.

Zeiger M. 2000. Essentials of writing biomedical research papers. 2nd ed. New York: McGraw-Hill.

Zerubavel E. 1999. The clockwork muse: a practical guide to writing theses, dissertations, and books. Cambridge, MA: Harvard University Press.